The difference between prokaryotic and eukaryotic RNA polymerase lies in their structure, function, and the complexity of the organisms in which they are found. RNA polymerases are essential enzymes involved in transcription, the process by which genetic information from DNA is transcribed into a messenger RNA (mRNA) molecule. While both prokaryotic and eukaryotic cells require RNA polymerase to carry out transcription, there are some key distinctions between the two.

Prokaryotic RNA Polymerase:
Prokaryotic cells are simple, single-celled organisms without a true nucleus or membrane-bound organelles. The majority of prokaryotes possess one type of RNA polymerase, known as prokaryotic RNA polymerase, which is responsible for transcribing all types of RNA molecules.
– Prokaryotic RNA polymerase consists of a core enzyme and a sigma factor. The core enzyme is composed of several subunits that work together to catalyze the transcription process. The sigma factor recognizes the promoter region on the DNA and helps to initiate transcription.
– Prokaryotic RNA polymerase synthesizes three main types of RNA molecules: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These molecules play critical roles in protein synthesis and gene regulation.
– Prokaryotic RNA polymerase is capable of recognizing the promoter sequence in the DNA and initiating transcription without the need for additional factors or co-enzymes.
– Prokaryotic RNA polymerase has a high processivity, meaning it can transcribe long stretches of DNA without dissociating from the template.
– Prokaryotic RNA polymerase can also initiate transcription at multiple sites on the same DNA molecule simultaneously, contributing to the high transcriptional activity observed in prokaryotic cells.
– Prokaryotic RNA polymerase does not require additional modifications or processing of the RNA molecules it transcribes before they can be translated into proteins.

Eukaryotic RNA Polymerase:
Eukaryotic cells are complex, multi-cellular organisms with a true nucleus and various membrane-bound organelles. These cells have different types of RNA polymerases specialized for transcribing different classes of RNA molecules.
– Eukaryotic RNA polymerases are designated as RNA polymerase I, II, and III. Each type of RNA polymerase transcribes a specific class of RNA molecules. RNA polymerase II, in particular, is responsible for synthesizing mRNA.
– Eukaryotic RNA polymerases consist of a core enzyme and several additional subunits that regulate their activity and specificity. These subunits are required for transcription initiation and elongation.
– Eukaryotic RNA polymerases require the assistance of transcription factors and co-factors to recognize the promoter sequence and initiate transcription.
– Unlike prokaryotic RNA polymerase, eukaryotic RNA polymerases have lower processivity and are more likely to dissociate from the DNA template during transcription.
– Eukaryotic RNA polymerases require additional modifications and processing of the transcribed RNA molecules before they can be transported out of the nucleus and translated into proteins. These modifications include the addition of a 5′ cap and a poly(A) tail, as well as the removal of introns through RNA splicing.
Frequently Asked Questions
1. How do prokaryotic and eukaryotic RNA polymerase differ in terms of structure?
Prokaryotic RNA polymerase consists of a core enzyme and a sigma factor, while eukaryotic RNA polymerases have additional subunits that regulate their activity and specificity.
2. Do prokaryotic and eukaryotic RNA polymerases transcribe the same types of RNA molecules?
Prokaryotic RNA polymerase transcribes mRNA, tRNA, and rRNA, whereas eukaryotic cells have different RNA polymerases for each class of RNA molecules.
3. Can prokaryotic and eukaryotic RNA polymerases initiate transcription without additional factors?
Prokaryotic RNA polymerase can initiate transcription without additional factors, while eukaryotic RNA polymerases require the assistance of transcription factors and co-factors.
Final Thoughts
In summary, the difference between prokaryotic and eukaryotic RNA polymerase lies in their structure, function, and regulation. While both are essential for transcription, prokaryotic RNA polymerase is simpler and can transcribe different types of RNA molecules without additional modifications, whereas eukaryotic RNA polymerases are more complex and require various factors to initiate transcription and process the resulting RNA molecules. Understanding these differences helps shed light on the fundamental processes of gene expression and the remarkable diversity of life on Earth.